PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12480.2.p
Common NameBRADI_3g12480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 320aa    MW: 34543 Da    PI: 7.67
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12480.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058253276123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ Cg k+Fs  s+L++H + +
  Bradi3g12480.2.p 253 YVCNRCGrKHFSVLSDLRTHEKHC 276
                       9*******************9985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSPVMDNYEQ LDVELEKVQL LHPLVGLVVH SRGDVDPVVV ADAGAIVQEI VASSSSMMYA  60
FQHLCGAAGA ATTSAPMQLC RCRTAGCSDH QLQAMEDHEA DMMQQQHSGF YDDDGTFGKP  120
PAVAVAVAQQ EAATDVVQQE AASPGSGTST TATTIIELDA AELLAKYTDY CQVCGKGFKR  180
EANSRAHGDQ YKSKAALASP LSMPSSSPAS NSSKFSCPQE GCRRNMRHVR FTPLSSVICA  240
KNHYKRSHCP KMYVCNRCGR KHFSVLSDLR THEKHCGHSR WLCSCGTTFS RKDKLAGHVS  300
TFAGHHSVAA AARDQRTIY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234199.20.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein STAR3-like
TrEMBLA0A0Q3F5030.0A0A0Q3F503_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G12480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-64C2H2 family protein